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Split pipeline configs by dependency tier, then promote a regularized production parameter set locally

Status: Open.

#287 In matsengrp/multidms;

· jaredgalloway opened on Jul 29, 2026

Add an "Observed vs Predicted" density diagnostic tab to the dashboard

Status: Open.

#283 In matsengrp/multidms;

· jaredgalloway opened on Jul 15, 2026

Re-express fitted 0.4.0 spike model in PR #164 (main) form; verify Huber loss is preserved (params approximated from ge_fits.png)

Status: Open.

#281 In matsengrp/multidms;

· Haddox opened on Jul 14, 2026

Concurrent (single-solve) fitting for multidms

Status: Open.

#243 In matsengrp/multidms;

· jaredgalloway opened on Jun 17, 2026

Score the manuscript's fitted parameters under the PR #164 objective

Status: Open.

#242 In matsengrp/multidms;

· jaredgalloway opened on Jun 17, 2026

Test reduced per-block optimization iterations on scv2-spike pipeline

Status: Open.

#241 In matsengrp/multidms;

· jaredgalloway opened on Jun 17, 2026

fit_models_path step failures silently produce partial collections in spike pipeline

bugSomething isn't workingSomething isn't working

Status: Open.

#240 In matsengrp/multidms;

· jaredgalloway opened on May 8, 2026

Add learnable FlexibleSigmoid global epistasis function

Status: Open.

#197 In matsengrp/multidms;

· jaredgalloway opened on Mar 27, 2026

Add condition-specific mutation names to get_mutations_df

Status: Open.

#192 In matsengrp/multidms;

· jaredgalloway opened on Mar 2, 2026

Remove deprecated phenotype_as_effect parameter from get_mutations_df and get_variants_df

enhancementNew feature or requestNew feature or request

Status: Open.

#179 In matsengrp/multidms;

· jaredgalloway opened on Dec 3, 2025

Create v2.0 migration guide and update documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#177 In matsengrp/multidms;

· jaredgalloway opened on Nov 18, 2025

Update test suite for v2.0 and achieve >90% coverage

Status: Open.

#176 In matsengrp/multidms;

· jaredgalloway opened on Nov 18, 2025