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Refactor Data Class to Match v2.0 Contract Specification

Status: Open.

#182 In matsengrp/multidms;

· jgallowa07 opened on Dec 18, 2025

Remove deprecated phenotype_as_effect parameter from get_mutations_df and get_variants_df

enhancementNew feature or requestNew feature or request

Status: Open.

#179 In matsengrp/multidms;

· jgallowa07 opened on Dec 3, 2025

Optimize Model.fit to skip re-initialization when already fitted

enhancementNew feature or requestNew feature or request

Status: Open.

#178 In matsengrp/multidms;

· jgallowa07 opened on Dec 3, 2025

Create v2.0 migration guide and update documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#177 In matsengrp/multidms;

· jgallowa07 opened on Nov 18, 2025

Update test suite for v2.0 and achieve >90% coverage

Status: Open.

#176 In matsengrp/multidms;

· jgallowa07 opened on Nov 18, 2025

Update ModelCollection to work with new Model class

enhancementNew feature or requestNew feature or request

Status: Open.

#175 In matsengrp/multidms;

· jgallowa07 opened on Nov 18, 2025

Implement visualization methods for Model class

enhancementNew feature or requestNew feature or request

Status: Open.

#174 In matsengrp/multidms;

· jgallowa07 opened on Nov 18, 2025

Update altair and jax minimum version dependencies

Status: Open.

#167 In matsengrp/multidms;

· jgallowa07 opened on Dec 2, 2024

How do we count "times seen" with non-identical encodings and parameter transformation?

Status: Open.

#162 In matsengrp/multidms;

· jgallowa07 opened on Jul 8, 2024

Docs inline code formatting

Status: Open.

#155 In matsengrp/multidms;

· wsdewitt opened on Apr 8, 2024

Troubleshooting Documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#148 In matsengrp/multidms;

· jgallowa07 opened on Mar 22, 2024

<code>jax</code> disagreement with <code>pandarallel</code>

Status: Open.

#147 In matsengrp/multidms;

· jgallowa07 opened on Mar 22, 2024