Demultiplexing pipeline for short read genome sequencing data (illumina or aviti.)
Clone this repository and run the install script. It creates a version-named
conda env (e.g. dissect_v1.0.3) from the latest git tag and installs
dissectBCL into it, so the reported version always matches what's running
and older releases stay available side by side.
git clone git@github.com:maxplanck-ie/dissectBCL.git
cd dissectBCL
./install_dissect.sh
VERSION=$(git tag -l | tail -1) conda activate dissect_${VERSION}
Fill in the dissectBCL.ini file appropriately. By default the config file is expected to be in ~/configs/dissectBCL_prod.ini.
dissect
or
dissect -c /path/to/config.ini
or
dissect -f /path/to/flowcell.ini
Documentation is available here.