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Adds the nf-prov plugin to the nextflow.config.
This will output a BCO compatiable manifest.json file into the outDir with information on the pipeline provenance.

See https://github.com/nextflow-io/nf-prov for details

@adamjtaylor adamjtaylor self-assigned this Sep 29, 2023
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Error on run

ERROR ~ Unknown config attribute `params.outDir` -- check config file: /home/runner/work/nf-histoqc/nf-histoqc/nextflow.config

prov {
enabled = true
overwrite = true
file = "${params.outDir}/manifest.json"

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This seems like we need an "outDir" parameter to your workflow. Where would manifest.json be written to if we left out the parameter?

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@adamjtaylor adamjtaylor Oct 17, 2023

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params.outDir is set in main.nf line 8

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3 participants