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Update from upstream repo bioconda/bioconda-recipes#1

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Update from upstream repo bioconda/bioconda-recipes#1
backstroke-bot wants to merge 10000 commits intomegabitdragon:masterfrom
bioconda:master

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Hello! The remote bioconda/bioconda-recipes has some new changes that aren't in this fork.
So, here they are, ready to be merged! 🎉

If this pull request can be merged without conflict, you can publish your software
with these new changes.

If you have merge conflicts, this is a great place to fix them.

Have fun!

Created by Backstroke. Oh yea, I'm a bot.

BiocondaBot and others added 30 commits January 24, 2026 19:57
* Update bigscape to 2.0.1

* Add run requirement importlib_resources

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Co-authored-by: Brandon Seah <kbseah@users.noreply.github.com>
* Update metabolights-utils to 1.4.16

* Update metabolights-utils to 1.4.17

* Update metabolights-utils to 1.4.18
* Update chamois to 0.2.1

* Update pyhmmer pin to match package requirement

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Co-authored-by: Brandon Seah <kbseah@users.noreply.github.com>
* add patch to reflect real version used

* increment build

* Update shamus to reflect new release

* remove patch not necesssary anymore

* remove use of patch
* Update synth-pdb to 1.7.0

* Update synth-pdb to 1.8.0

* Update synth-pdb to 1.8.2
* Update snakemake-storage-plugin-cached-http to version 0.2

* Update to bugfix version 0.2.1

* Add new zstandard dependency
* Add PyamilySeq v1.3.2

* Adding ORForise pip package

* Delete recipes/pyamilyseq/meta.yaml
Co-authored-by: Michael Uhl <uhl.michael@gmx.de>
* recipe for phast with new cmake system

* remove old build.sh

* Omit pcre, blas, and lapack from run:

* adding minimal run: to address missing runtime DSOs

* ensure conda-build uses cctools otool (avoids llvm-otool SIGABRT)
* bigscape: fix `pyhmmer` dependency

* bigscape: update build number
* adding MLST to the package

* update version number
Includes Python version bump.
* Update palantir to 1.4.3

* Update requirements; use --no-deps option for pip

Removed run requirements from host section

Updated dependency list per upstream repo's pyproject.toml

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Co-authored-by: Brandon Seah <kbseah@users.noreply.github.com>
raufs and others added 30 commits February 5, 2026 19:24
* Update meta.yaml

* Increment build number from 0 to 1
* add apybiomart recipe

* remove asyncio patch

* fix patch
* Update htseq to 2.1.2

* Update imports and requirements

* Update imports to test

* Update Python version requirement to >=3.10

---------

Co-authored-by: Brandon Seah <kbseah@users.noreply.github.com>
* Update darkprofiler to 0.2.0

* Update darkprofiler to 0.2.1

* Update darkprofiler to 0.2.2

* Update darkprofiler to 0.2.3

* Update darkprofiler to 0.2.6
* domainator recipe

* fix

* add run_exports

* bump version

* add noarch: python

* fixing noarch

* fix domainator recipe again

---------

Co-authored-by: seanrjohnson <seanrjohnson@users.noreply.github.com>
* [biobb_flexdyn] update 5.2.0

* [biobb_flexdyn] update 5.2.0

* [biobb_flexdyn] update 5.2.0
* added recipe

* add setuptools to host section

* fixed deps

* remove windoofs

* lint

* re-added noarch: generic

* revert

* remove pip check command

* changed
* Update pybiolib to 1.3.27

* Update pybiolib to 1.3.34
* multitax v1.4.0 with fixed deps

* fix lint

* Fix deps

* fix url

* Skip builds

* Add version setuptools_scm
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