segementation-label-fusion

Different Label Fusion Approaches for segmentation masks

Instructions to do STAPLE Label Fusion:

First, cd to the STAPLE Folder

1. Entry point is cli.py file.
2. Run cli.py using run.sh.
3. Open the run.sh to see what parameters to be passed.
4. The parameters that need to be passed are the list of segmentations of individual classes, since STAPLE operates on individual classes.

Instructions to do SIMPLE Label Fusion:

1. cd to the SIMPLE Folder
2. Run the SIMPLE.sh to run the SIMPLE algorithm. Make sure the paths to the individual segmentations exist (This applies to the above also)

Instructions to do Majority Voting Label Fusion:

1. cd to the majority_voting Folder
2. Run the mv.sh to run the Majority Voting algorithm.