Applications: Cytoland refactor

.claude/commands/gsd/add-phase.md

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+---
+name: gsd:add-phase
+description: Add phase to end of current milestone in roadmap
+argument-hint: <description>
+allowed-tools:
+  - Read
+  - Write
+  - Bash
+---
+
+<objective>
+Add a new integer phase to the end of the current milestone in the roadmap.
+
+Routes to the add-phase workflow which handles:
+- Phase number calculation (next sequential integer)
+- Directory creation with slug generation
+- Roadmap structure updates
+- STATE.md roadmap evolution tracking
+</objective>
+
+<execution_context>
+@./.claude/get-shit-done/workflows/add-phase.md
+</execution_context>
+
+<context>
+Arguments: $ARGUMENTS (phase description)
+
+Roadmap and state are resolved in-workflow via `init phase-op` and targeted tool calls.
+</context>
+
+<process>
+**Follow the add-phase workflow** from `@./.claude/get-shit-done/workflows/add-phase.md`.
+
+The workflow handles all logic including:
+1. Argument parsing and validation
+2. Roadmap existence checking
+3. Current milestone identification
+4. Next phase number calculation (ignoring decimals)
+5. Slug generation from description
+6. Phase directory creation
+7. Roadmap entry insertion
+8. STATE.md updates
+</process>

.claude/commands/gsd/add-tests.md

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+---
+name: gsd:add-tests
+description: Generate tests for a completed phase based on UAT criteria and implementation
+argument-hint: "<phase> [additional instructions]"
+allowed-tools:
+  - Read
+  - Write
+  - Edit
+  - Bash
+  - Glob
+  - Grep
+  - Task
+  - AskUserQuestion
+argument-instructions: |
+  Parse the argument as a phase number (integer, decimal, or letter-suffix), plus optional free-text instructions.
+  Example: /gsd:add-tests 12
+  Example: /gsd:add-tests 12 focus on edge cases in the pricing module
+---
+<objective>
+Generate unit and E2E tests for a completed phase, using its SUMMARY.md, CONTEXT.md, and VERIFICATION.md as specifications.
+
+Analyzes implementation files, classifies them into TDD (unit), E2E (browser), or Skip categories, presents a test plan for user approval, then generates tests following RED-GREEN conventions.
+
+Output: Test files committed with message `test(phase-{N}): add unit and E2E tests from add-tests command`
+</objective>
+
+<execution_context>
+@./.claude/get-shit-done/workflows/add-tests.md
+</execution_context>
+
+<context>
+Phase: $ARGUMENTS
+
+@.planning/STATE.md
+@.planning/ROADMAP.md
+</context>
+
+<process>
+Execute the add-tests workflow from @./.claude/get-shit-done/workflows/add-tests.md end-to-end.
+Preserve all workflow gates (classification approval, test plan approval, RED-GREEN verification, gap reporting).
+</process>

.claude/commands/gsd/add-todo.md

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+---
+name: gsd:add-todo
+description: Capture idea or task as todo from current conversation context
+argument-hint: [optional description]
+allowed-tools:
+  - Read
+  - Write
+  - Bash
+  - AskUserQuestion
+---
+
+<objective>
+Capture an idea, task, or issue that surfaces during a GSD session as a structured todo for later work.
+
+Routes to the add-todo workflow which handles:
+- Directory structure creation
+- Content extraction from arguments or conversation
+- Area inference from file paths
+- Duplicate detection and resolution
+- Todo file creation with frontmatter
+- STATE.md updates
+- Git commits
+</objective>
+
+<execution_context>
+@./.claude/get-shit-done/workflows/add-todo.md
+</execution_context>
+
+<context>
+Arguments: $ARGUMENTS (optional todo description)
+
+State is resolved in-workflow via `init todos` and targeted reads.
+</context>
+
+<process>
+**Follow the add-todo workflow** from `@./.claude/get-shit-done/workflows/add-todo.md`.
+
+The workflow handles all logic including:
+1. Directory ensuring
+2. Existing area checking
+3. Content extraction (arguments or conversation)
+4. Area inference
+5. Duplicate checking
+6. File creation with slug generation
+7. STATE.md updates
+8. Git commits
+</process>

.claude/commands/gsd/audit-milestone.md

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+---
+name: gsd:audit-milestone
+description: Audit milestone completion against original intent before archiving
+argument-hint: "[version]"
+allowed-tools:
+  - Read
+  - Glob
+  - Grep
+  - Bash
+  - Task
+  - Write
+---
+<objective>
+Verify milestone achieved its definition of done. Check requirements coverage, cross-phase integration, and end-to-end flows.
+
+**This command IS the orchestrator.** Reads existing VERIFICATION.md files (phases already verified during execute-phase), aggregates tech debt and deferred gaps, then spawns integration checker for cross-phase wiring.
+</objective>
+
+<execution_context>
+@./.claude/get-shit-done/workflows/audit-milestone.md
+</execution_context>
+
+<context>
+Version: $ARGUMENTS (optional — defaults to current milestone)
+
+Core planning files are resolved in-workflow (`init milestone-op`) and loaded only as needed.
+
+**Completed Work:**
+Glob: .planning/phases/*/*-SUMMARY.md
+Glob: .planning/phases/*/*-VERIFICATION.md
+</context>
+
+<process>
+Execute the audit-milestone workflow from @./.claude/get-shit-done/workflows/audit-milestone.md end-to-end.
+Preserve all workflow gates (scope determination, verification reading, integration check, requirements coverage, routing).
+</process>

.claude/commands/gsd/check-todos.md

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+---
+name: gsd:check-todos
+description: List pending todos and select one to work on
+argument-hint: [area filter]
+allowed-tools:
+  - Read
+  - Write
+  - Bash
+  - AskUserQuestion
+---
+
+<objective>
+List all pending todos, allow selection, load full context for the selected todo, and route to appropriate action.
+
+Routes to the check-todos workflow which handles:
+- Todo counting and listing with area filtering
+- Interactive selection with full context loading
+- Roadmap correlation checking
+- Action routing (work now, add to phase, brainstorm, create phase)
+- STATE.md updates and git commits
+</objective>
+
+<execution_context>
+@./.claude/get-shit-done/workflows/check-todos.md
+</execution_context>
+
+<context>
+Arguments: $ARGUMENTS (optional area filter)
+
+Todo state and roadmap correlation are loaded in-workflow using `init todos` and targeted reads.
+</context>
+
+<process>
+**Follow the check-todos workflow** from `@./.claude/get-shit-done/workflows/check-todos.md`.
+
+The workflow handles all logic including:
+1. Todo existence checking
+2. Area filtering
+3. Interactive listing and selection
+4. Full context loading with file summaries
+5. Roadmap correlation checking
+6. Action offering and execution
+7. STATE.md updates
+8. Git commits
+</process>

.claude/commands/gsd/cleanup.md

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+---
+name: gsd:cleanup
+description: Archive accumulated phase directories from completed milestones
+---
+<objective>
+Archive phase directories from completed milestones into `.planning/milestones/v{X.Y}-phases/`.
+
+Use when `.planning/phases/` has accumulated directories from past milestones.
+</objective>
+
+<execution_context>
+@./.claude/get-shit-done/workflows/cleanup.md
+</execution_context>
+
+<process>
+Follow the cleanup workflow at @./.claude/get-shit-done/workflows/cleanup.md.
+Identify completed milestones, show a dry-run summary, and archive on confirmation.
+</process>

.claude/commands/gsd/complete-milestone.md

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+---
+type: prompt
+name: gsd:complete-milestone
+description: Archive completed milestone and prepare for next version
+argument-hint: <version>
+allowed-tools:
+  - Read
+  - Write
+  - Bash
+---
+
+<objective>
+Mark milestone {{version}} complete, archive to milestones/, and update ROADMAP.md and REQUIREMENTS.md.
+
+Purpose: Create historical record of shipped version, archive milestone artifacts (roadmap + requirements), and prepare for next milestone.
+Output: Milestone archived (roadmap + requirements), PROJECT.md evolved, git tagged.
+</objective>
+
+<execution_context>
+**Load these files NOW (before proceeding):**
+
+- @./.claude/get-shit-done/workflows/complete-milestone.md (main workflow)
+- @./.claude/get-shit-done/templates/milestone-archive.md (archive template)
+  </execution_context>
+
+<context>
+**Project files:**
+- `.planning/ROADMAP.md`
+- `.planning/REQUIREMENTS.md`
+- `.planning/STATE.md`
+- `.planning/PROJECT.md`
+
+**User input:**
+
+- Version: {{version}} (e.g., "1.0", "1.1", "2.0")
+  </context>
+
+<process>
+
+**Follow complete-milestone.md workflow:**
+
+0. **Check for audit:**
+
+   - Look for `.planning/v{{version}}-MILESTONE-AUDIT.md`
+   - If missing or stale: recommend `/gsd:audit-milestone` first
+   - If audit status is `gaps_found`: recommend `/gsd:plan-milestone-gaps` first
+   - If audit status is `passed`: proceed to step 1
+
+   ```markdown
+   ## Pre-flight Check
+
+   {If no v{{version}}-MILESTONE-AUDIT.md:}
+   ⚠ No milestone audit found. Run `/gsd:audit-milestone` first to verify
+   requirements coverage, cross-phase integration, and E2E flows.
+
+   {If audit has gaps:}
+   ⚠ Milestone audit found gaps. Run `/gsd:plan-milestone-gaps` to create
+   phases that close the gaps, or proceed anyway to accept as tech debt.
+
+   {If audit passed:}
+   ✓ Milestone audit passed. Proceeding with completion.
+   ```
+
+1. **Verify readiness:**
+
+   - Check all phases in milestone have completed plans (SUMMARY.md exists)
+   - Present milestone scope and stats
+   - Wait for confirmation
+
+2. **Gather stats:**
+
+   - Count phases, plans, tasks
+   - Calculate git range, file changes, LOC
+   - Extract timeline from git log
+   - Present summary, confirm
+
+3. **Extract accomplishments:**
+
+   - Read all phase SUMMARY.md files in milestone range
+   - Extract 4-6 key accomplishments
+   - Present for approval
+
+4. **Archive milestone:**
+
+   - Create `.planning/milestones/v{{version}}-ROADMAP.md`
+   - Extract full phase details from ROADMAP.md
+   - Fill milestone-archive.md template
+   - Update ROADMAP.md to one-line summary with link
+
+5. **Archive requirements:**
+
+   - Create `.planning/milestones/v{{version}}-REQUIREMENTS.md`
+   - Mark all v1 requirements as complete (checkboxes checked)
+   - Note requirement outcomes (validated, adjusted, dropped)
+   - Delete `.planning/REQUIREMENTS.md` (fresh one created for next milestone)
+
+6. **Update PROJECT.md:**
+
+   - Add "Current State" section with shipped version
+   - Add "Next Milestone Goals" section
+   - Archive previous content in `<details>` (if v1.1+)
+
+7. **Commit and tag:**
+
+   - Stage: MILESTONES.md, PROJECT.md, ROADMAP.md, STATE.md, archive files
+   - Commit: `chore: archive v{{version}} milestone`
+   - Tag: `git tag -a v{{version}} -m "[milestone summary]"`
+   - Ask about pushing tag
+
+8. **Offer next steps:**
+   - `/gsd:new-milestone` — start next milestone (questioning → research → requirements → roadmap)
+
+</process>
+
+<success_criteria>
+
+- Milestone archived to `.planning/milestones/v{{version}}-ROADMAP.md`
+- Requirements archived to `.planning/milestones/v{{version}}-REQUIREMENTS.md`
+- `.planning/REQUIREMENTS.md` deleted (fresh for next milestone)
+- ROADMAP.md collapsed to one-line entry
+- PROJECT.md updated with current state
+- Git tag v{{version}} created
+- Commit successful
+- User knows next steps (including need for fresh requirements)
+  </success_criteria>
+
+<critical_rules>
+
+- **Load workflow first:** Read complete-milestone.md before executing
+- **Verify completion:** All phases must have SUMMARY.md files
+- **User confirmation:** Wait for approval at verification gates
+- **Archive before deleting:** Always create archive files before updating/deleting originals
+- **One-line summary:** Collapsed milestone in ROADMAP.md should be single line with link
+- **Context efficiency:** Archive keeps ROADMAP.md and REQUIREMENTS.md constant size per milestone
+- **Fresh requirements:** Next milestone starts with `/gsd:new-milestone` which includes requirements definition
+  </critical_rules>