Feature/ontology mapping

[jmikedupont2]

PR Type

Enhancement, Tests

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Description

• Major architectural refactoring to modular crate-based system with extensive new tooling and analysis capabilities
• Added comprehensive CLI tools for codebase analysis including Tantivy search, Git object indexing, and emoji extraction
• Implemented advanced semantic web and ontology management systems with RDF processing and RDFS reasoning
• Created signal-based architecture for wallet management and component state handling
• Added specialized analysis systems including Tarot readings, phase mapping, and Gödel number distance calculations
• Refactored component builders and orbital simulations to use external library dependencies
• Introduced documentation cross-reference indexing with navigation patterns for different user types
• Updated integration tests to focus on function analysis and processing workflows
• Added emoji mapping system for programming concepts with over 200 categorized assignments

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Diagram Walkthrough

flowchart LR
  A["Monolithic Components"] --> B["Modular Crate Architecture"]
  B --> C["CLI Analysis Tools"]
  B --> D["Semantic Web Systems"]
  B --> E["Signal-based State Management"]
  C --> F["Tantivy Search Engine"]
  C --> G["Git Object Indexing"]
  C --> H["Emoji Analysis"]
  D --> I["RDF Processing"]
  D --> J["Ontology Management"]
  E --> K["Wallet Manager"]
  E --> L["Component Registry"]

Loading

File Walkthrough

	Relevant files
Enhancement	15 files test_emojis.rs Refactor component builder to use modular crate architecture src/playground/test_emojis.rs • Replaced entire component builder implementation with re-exports from modular crates • Removed 1300+ lines of complex component definitions, enums, and UI logic • Added simple re-exports for ComponentBuilderEmojiApp, ComponentName, ComponentInstance, and PropValue • Simplified from component_builder_lib, component_registry_lib, and component_emoji_lib +5/-1306 orbits.rs Refactor orbital simulation to use external libraries        src/playground/orbits.rs • Replaced complex orbital simulation code with imports from orbital_sim_lib • Added integration with emoji_matrix_lib for creating theme nodes from emoji data • Simplified ThemeOrbitalNetwork component to use external libraries • Added function to convert EmojiMatrix data into ThemeNodes with random properties +195/-1049 codebase_analyzer_cli.rs Add codebase analyzer CLI tool with emoji analysis              crates/solfunmeme_tools/src/bin/codebase_analyzer_cli.rs • Added new CLI tool for analyzing codebase using Tantivy search index • Implemented commands for word frequency, emoji frequency, file types, search, and statistics • Added emoji extraction using regex patterns for Unicode emoji ranges • Includes functionality to analyze and display top emojis with their names and occurrence counts +239/-0  documentation_index.rs Add comprehensive documentation cross-reference indexing system crates/doc_cross_references/src/documentation_index.rs • New comprehensive documentation indexing system with 770 lines of code • Implements DocumentationIndex struct with documents, categories, and navigation patterns • Establishes cross-references between different documentation types (systems design, architecture, UML diagrams, ontologies) • Provides navigation patterns for different user types (new users, developers, architects, admins) +770/-0  recursive_index_cli.rs Add recursive codebase indexing CLI tool                                  crates/solfunmeme_tools/src/bin/recursive_index_cli.rs • New CLI tool for recursive codebase indexing following Git object model structure • Implements file tree traversal with metadata extraction and language detection • Supports gitmodules parsing, file type statistics, and configurable skip rules • Provides tree visualization and JSON output for indexing results +573/-0  git_object_indexer_cli.rs Add Git object content-addressed indexing CLI tool              crates/solfunmeme_tools/src/bin/git_object_indexer_cli.rs • New CLI tool for indexing Git objects using content-addressed hashes • Implements Git repository analysis with object traversal and content hashing • Supports function signature extraction, emoji hash generation, and duplicate detection • Provides comprehensive Git object statistics and JSON output +547/-0  wallet.rs Add signal-based wallet state management system                    crates/signals_lib/src/wallet.rs • New wallet state management system using signal-based architecture • Implements WalletManager with connection state, balance tracking, and network management • Provides global wallet manager instance with convenience functions • Supports async signal management for wallet operations and loading states +178/-0  tarot_example.rs Complete Tarot System Implementation with Advanced Analysis crates/solfunmeme_models/examples/tarot_example.rs • Creates a comprehensive Tarot system with deck management, readings, and analysis • Implements Major Arcana cards with semantic embeddings and flow vectors • Provides advanced analysis features including card relationships and energy patterns • Includes a complete example demonstrating three-card readings and pattern analysis +367/-0  danbri.rs Advanced RDF Processing and Ontology Management System      crates/semweb_lib/src/danbri.rs • Implements advanced RDF processing and ontology management inspired by Dan Brickley's work • Provides comprehensive RDF validation, pattern analysis, and vocabulary mapping • Includes complex ontology creation with classes, properties, and individuals • Features RDFS reasoning and schema validation capabilities +541/-0  main.rs Phase Mapping System with Dimensionality Reduction to 42 Phases phase_demo/src/main.rs • Creates a phase mapping system that reduces high-dimensional embeddings to 42 phases • Implements hash-based and harmonic dimensionality reduction algorithms • Provides phase statistics, cross-phase resonance analysis, and mathematical properties • Demonstrates universal numbering concept with generic apply function capabilities +449/-0  emoji_names.rs Comprehensive Emoji Mapping System for Programming Concepts crates/core_data_lib/src/emoji_names.rs • Provides comprehensive emoji mappings for Rust core language constructs • Includes categorized emoji assignments for web/CSS, crypto, and project-specific terms • Implements sub-categorization for Rust core elements (declarations, literals, control flow, etc.) • Maps over 200 programming concepts to appropriate emoji representations +221/-0  lib.rs Tantivy-based Search Engine for Code Analysis                        crates/solfunmeme_search_tantivy/src/lib.rs • Implements full-text search functionality using Tantivy search engine • Provides code chunk indexing with semantic embeddings and Clifford vectors • Includes bag-of-words analysis and similarity calculations • Features specialized search methods for emojis, paths, and statistical analysis +402/-0  godel_distance_standalone.rs Gödel Number Euclidean Distance Analysis System                    godel_distance_standalone.rs • Implements Gödel numbering operations with Euclidean distance calculations • Provides 8D prime exponent vector projections for geometric analysis • Includes clustering, resonance analysis, and mathematical insights • Demonstrates geometric relationships between concepts in Gödel space +385/-0  file_identifier_cli.rs File Identification CLI Tool with Size Analysis                    crates/solfunmeme_tools/src/bin/file_identifier_cli.rs • Creates CLI tool for file type identification and size analysis • Provides magic header detection and extension-based file categorization • Includes size filtering, verbosity controls, and statistical summaries • Suggests optimization strategies for large file types +144/-0  wikidata_memes.rs Wikidata Memes Component Placeholder                                          crates/views_lib/src/memes/wikidata_memes.rs • Adds placeholder component for Wikidata memes functionality • Implements basic Dioxus component structure • Provides foundation for future Wikidata integration features +12/-0
Formatting	2 files rust_bert_wasm.rs Formatting or line ending normalization for WASM BERT module src/playground/rust_bert_wasm.rs • File content appears to be identical with no actual changes • All lines show as both removed and added, suggesting a formatting or line ending change • Contains WASM-compatible BERT-like functionality with embedding, sentiment analysis, text classification, and summarization +373/-373 tests.rs Formatting or line ending normalization for extractor tests crates/solfunmeme_extractor/src/tests.rs • File content appears to be identical with no actual changes • All lines show as both removed and added, suggesting a formatting or line ending change • Contains test functions for code snippet extraction and processing +348/-348
Tests	1 files integration_tests.rs Updated Integration Tests for Function Analysis System      tests/integration_tests.rs • Replaces code analysis tests with function analysis and processing tests • Updates test imports to use new function analysis and Clifford algebra modules • Implements tests for code snippet extraction, file processing, and multivector operations • Adds comprehensive error handling and processing workflow tests +173/-229

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[qodo-code-review]

PR Reviewer Guide 🔍

Here are some key observations to aid the review process:

⏱️ Estimated effort to review: 5 🔵🔵🔵🔵🔵

🧪 PR contains tests

🔒 No security concerns identified

⚡ Recommended focus areas for review Breaking Change Complete replacement of 1300+ lines of component builder implementation with just 6 lines of re-exports. This removes all existing functionality including component selection, configuration panels, emoji dialogs, and rendering logic without clear migration path. // Re-export the component builder from the new modular crates pub use component_builder_lib::ComponentBuilderEmojiApp; // For backward compatibility, we can also re-export the types if needed pub use component_registry_lib::{ComponentName, ComponentInstance, PropValue}; pub use component_emoji_lib::{get_emoji, get_emoji_style}; External Dependencies Heavy reliance on new external crates (orbital_sim_lib, emoji_matrix_lib, core_data_lib) that may not exist or be properly integrated. The code assumes these libraries provide specific functions and data structures without validation. use orbital_sim_lib::{simulate_orbit, ThemeNode}; use emoji_matrix_lib::{parse_summary_total, parse_summary_root, rollup_emoji_matrix}; use core_data_lib::EmojiMatrix; Error Handling Multiple unwrap operations and potential panics in RDF serialization methods. The code uses unchecked operations and may fail silently or with unclear error messages during graph processing. sophia_api::prefix::Prefix::new_unchecked(prefix.clone().into()), Iri::new_unchecked(iri.as_str().into()), ));

[qodo-code-review]

PR Code Suggestions ✨

Explore these optional code suggestions:

Category	Suggestion	Impact
General	Validate document references exist The method returns a formatted string but doesn't validate if referenced documents exist in the index. This could lead to broken navigation patterns pointing to non-existent files. Add validation to ensure all referenced documents exist before returning the pattern. crates/doc_cross_references/src/documentation_index.rs [743-757] pub fn get_navigation_pattern(&self, user_type: &str) -> Result<String> { if let Some(pattern) = self.navigation_patterns.get(user_type) { + // Validate that all referenced documents exist + for step in &pattern.steps { + if !self.documents.iter().any(|d| d.path == step.document) { + return Err(anyhow::anyhow!("Navigation pattern references non-existent document: {}", step.document)); + } + } + let mut output = format!("Navigation pattern for {} users:\n", user_type); output.push_str(&format!("Description: {}\n\n", pattern.description)); for step in &pattern.steps { output.push_str(&format!("{}. {} - {}\n", step.order, step.document, step.purpose)); output.push_str(&format!(" {}\n\n", step.description)); } Ok(output) } else { Err(anyhow::anyhow!("Unknown user type: {}", user_type)) } } [To ensure code accuracy, apply this suggestion manually] Suggestion importance[1-10]: 7 __ Why: This is a good suggestion for improving robustness by ensuring that navigation patterns do not reference non-existent documents, which would be a bug.	Medium
	Improve mass calculation stability The mass calculation could result in very small values for low emoji counts, potentially causing numerical instability in orbital calculations. Consider using a more robust scaling formula that provides better mass distribution. src/playground/orbits.rs [35] -let mass = (emoji_count.count as f64 / 100.0).max(0.1); // Ensure mass is not zero +let mass = (emoji_count.count as f64).log10().max(0.5) + 0.5; // Logarithmic scaling with minimum mass [To ensure code accuracy, apply this suggestion manually] Suggestion importance[1-10]: 5 __ Why: The suggestion correctly identifies that the linear scaling of mass could be improved for better visual distribution in the simulation, and proposing a logarithmic scale is a valid enhancement.	Low
	Optimize memory usage for binary detection The function performs binary detection on potentially large files by reading entire content into memory. This could cause memory issues with very large files. Consider reading only a sample of the file content for binary detection instead of the entire file. crates/solfunmeme_tools/src/bin/recursive_index_cli.rs [109-143] fn is_text_file(path: &Path, content: &[u8]) -> bool { // Check file extension first if let Some(ext) = path.extension() { let ext_str = ext.to_string_lossy().to_lowercase(); let text_extensions = [ "rs", "md", "json", "toml", "txt", "js", "ts", "tsx", "py", "go", "java", "c", "cpp", "h", "hpp", "scm", "lisp", "clj", "hs", "ml", "f90", "f95", "sql", "xml", "html", "css", "scss", "yaml", "yml", "ini", "cfg", "conf", "sh", "bash", "zsh", "fish", "ps1", "bat", "cmd", "makefile", "dockerfile", "gitignore", "gitattributes", "gitmodules", "license", "readme", "changelog" ]; if text_extensions.contains(&ext_str.as_str()) { return true; } } - ... + + // Check magic headers for common text formats + if content.len() >= 4 { + let header = &content[..4]; + if header == b"#!sh" || header == b"#!ba" || header == b"#!py" || + header == b"#!go" || header == b"#!js" || header == b"#!ts" { + return true; + } + } + + // Check if content is mostly printable ASCII/UTF-8 (sample first 8KB for large files) + if content.len() > 0 { + let sample_size = std::cmp::min(8192, content.len()); + let sample = &content[..sample_size]; + let printable_ratio = sample.iter() + .filter(|&&b| b.is_ascii_graphic() || b.is_ascii_whitespace()) + .count() as f64 / sample.len() as f64; + return printable_ratio > 0.8; + } + + false } [To ensure code accuracy, apply this suggestion manually] Suggestion importance[1-10]: 5 __ Why: The suggestion correctly identifies that checking the entire content of a large file is inefficient and proposes a valid optimization by sampling the content, which improves performance.	Low
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