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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 30 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 81 repositories
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 5 112 (3 issues need help) 16 Updated Mar 13, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 5 CC0-1.0 0 7 2 Updated Mar 13, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 1 0 8 2 Updated Mar 12, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 9 0 149 16 Updated Mar 12, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 62 3 Updated Mar 12, 2025
  • nmdc-edge Public

    Web-based interface to the NMDC EDGE platform

    microbiomedata/nmdc-edge’s past year of commit activity
    JavaScript 4 0 77 (1 issue needs help) 0 Updated Mar 12, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 30 CC0-1.0 8 356 (1 issue needs help) 10 Updated Mar 12, 2025
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Jupyter Notebook 0 0 22 9 Updated Mar 12, 2025
  • ontology-loader Public
    microbiomedata/ontology-loader’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • nmdc_api_utilities Public

    A library designed to simplify various research tasks for users looking to leverage the NMDC (National Microbiome Data Collaborative) APIs. The library provides a collection of general-purpose functions that facilitate easy access, manipulation, and analysis of microbiome data.

    microbiomedata/nmdc_api_utilities’s past year of commit activity
    Python 3 0 3 0 Updated Mar 12, 2025
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