patch: default to true for paired input boolean

Chienchi Lo · Chienchi Lo · commit f1812f9fed52 · 2025-12-11T20:46:36.000-07:00
diff --git a/ReadbasedAnalysis.wdl b/ReadbasedAnalysis.wdl
@@ -16,7 +16,7 @@ workflow ReadbasedAnalysis {
         File   input_file
         String proj
         String prefix = sub(proj, ":", "_")
-        Boolean paired = false
+        Boolean paired = true
         Boolean long_read = false
         String bbtools_container = "microbiomedata/bbtools:38.96"
         String singlem_container = "wwood/singlem:0.20.2"
diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-v1.1.1
+v1.1.2
