Assign study_name on patch and migrate existing names

Author: marySalvi

nmdc_server/api.py

@@ -825,6 +825,7 @@ async def update_submission(
     submission.metadata_submission = (
         submission.metadata_submission | body_dict["metadata_submission"]
     )
+    submission.study_name = body_dict["metadata_submission"]["studyForm"]["studyName"]
     # Update permissions and status iff the user is an "owner"
     if current_user_role and current_user_role.role == models.SubmissionEditorRole.owner:
         new_permissions = body_dict.get("permissions", None)

nmdc_server/migrations/versions/5403c7fe0b33_migrate_study_names.py

@@ -0,0 +1,52 @@
+"""Migrate Study names
+
+Revision ID: 5403c7fe0b33
+Revises: 0ff690fb929d
+Create Date: 2024-09-09 18:50:11.771035
+
+"""
+
+from typing import Optional
+
+import sqlalchemy as sa
+from alembic import op
+from sqlalchemy.dialects.postgresql import JSONB
+from sqlalchemy.sql import column, table
+
+# revision identifiers, used by Alembic.
+revision: str = "5403c7fe0b33"
+down_revision: Optional[str] = "0ff690fb929d"
+branch_labels: Optional[str] = None
+depends_on: Optional[str] = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    submission_metadata = table(
+        "submission_metadata",
+        column("id", sa.String),
+        column("metadata_submission", JSONB),
+        column("study_name", sa.String),
+    )
+
+    connection = op.get_bind()
+    submissions = connection.execute(
+        sa.select([submission_metadata.c.id, submission_metadata.c.metadata_submission])
+    )
+
+    for submission in submissions:
+        study_name = submission.metadata_submission["studyForm"].get("studyName")
+        if study_name:
+            connection.execute(
+                submission_metadata.update()
+                .where(submission_metadata.c.id == submission.id)
+                .values(study_name=study_name)
+            )
+    pass
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    pass
+    # ### end Alembic commands ###