Merge pull request #39 from microbiomedata/issue-32-ci-mongo-service #157
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| # Built from: | |
| # https://docs.github.com/en/actions/guides/building-and-testing-python | |
| # https://github.com/snok/install-poetry#workflows-and-tips | |
| name: Build and test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| - name: Set up Python | |
| uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 | |
| with: | |
| python-version: '3.10' | |
| - name: Install tox | |
| run: pipx install tox | |
| - name: Install Poetry | |
| run: pipx install poetry | |
| - name: lint | |
| run: make lint | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.9', '3.10', '3.11', '3.12' ] | |
| services: | |
| # Spin up a MongoDB the live-DB tests can connect to. The host port is | |
| # 27022 to match the value hardcoded in | |
| # tests/test_linkml_store_client_connections.py (which on `main` still | |
| # reads `MONGO_PORT = 27022` as a module-level constant); the env-reading | |
| # tests also pick up port 27022 via the MONGO_PORT env on the test step. | |
| # After #22's port-from-env change lands on `main`, this port choice | |
| # becomes arbitrary and can move to 27017. | |
| mongo: | |
| image: mongo:7 | |
| ports: | |
| - 27022:27017 | |
| env: | |
| MONGO_INITDB_ROOT_USERNAME: admin | |
| MONGO_INITDB_ROOT_PASSWORD: testpass | |
| options: >- | |
| --health-cmd "mongosh -u admin -p testpass --authenticationDatabase admin --eval 'db.adminCommand({ping:1})' --quiet" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 10 | |
| steps: | |
| - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2 | |
| - uses: ts-graphviz/setup-graphviz@b1de5da23ed0a6d14e0aeee8ed52fdd87af2363c # v2.0.2 | |
| - name: Install Poetry | |
| run: pipx install poetry | |
| - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'poetry' | |
| - name: Install dependencies | |
| run: poetry install --all-extras | |
| - name: Run test suite | |
| env: | |
| MONGO_HOST: localhost | |
| MONGO_PORT: '27022' | |
| MONGO_USERNAME: admin | |
| MONGO_PASSWORD: testpass | |
| MONGO_DBNAME: nmdc | |
| MONGO_DB: nmdc | |
| ENABLE_DB_TESTS: 'true' | |
| run: make test |