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Drop leftover test_db at session teardown (closes #43) #159

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Drop leftover test_db at session teardown (closes #43)

Drop leftover test_db at session teardown (closes #43) #159

Workflow file for this run

.github/workflows/main.yaml at dd55433
# Built from:
# https://docs.github.com/en/actions/guides/building-and-testing-python
# https://github.com/snok/install-poetry#workflows-and-tips
name: Build and test
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
- name: Set up Python
uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
with:
python-version: '3.10'
- name: Install tox
run: pipx install tox
- name: Install Poetry
run: pipx install poetry
- name: lint
run: make lint
test:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [ '3.9', '3.10', '3.11', '3.12' ]
services:
# Spin up a MongoDB the live-DB tests can connect to. The host port is
# 27022 to match the value hardcoded in
# tests/test_linkml_store_client_connections.py (which on `main` still
# reads `MONGO_PORT = 27022` as a module-level constant); the env-reading
# tests also pick up port 27022 via the MONGO_PORT env on the test step.
# After #22's port-from-env change lands on `main`, this port choice
# becomes arbitrary and can move to 27017.
mongo:
image: mongo:7
ports:
- 27022:27017
env:
MONGO_INITDB_ROOT_USERNAME: admin
MONGO_INITDB_ROOT_PASSWORD: testpass
options: >-
--health-cmd "mongosh -u admin -p testpass --authenticationDatabase admin --eval 'db.adminCommand({ping:1})' --quiet"
--health-interval 10s
--health-timeout 5s
--health-retries 10
steps:
- uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
- uses: ts-graphviz/setup-graphviz@b1de5da23ed0a6d14e0aeee8ed52fdd87af2363c # v2.0.2
- name: Install Poetry
run: pipx install poetry
- uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
with:
python-version: ${{ matrix.python-version }}
cache: 'poetry'
- name: Install dependencies
run: poetry install --all-extras
- name: Run test suite
env:
MONGO_HOST: localhost
MONGO_PORT: '27022'
MONGO_USERNAME: admin
MONGO_PASSWORD: testpass
MONGO_DBNAME: nmdc
MONGO_DB: nmdc
ENABLE_DB_TESTS: 'true'
run: make test