Modify JGI isolate sections and slot groups #288

	name: Preview documentation build

	on:
	pull_request:
	types:
	- opened
	- reopened
	- synchronize

	concurrency: preview-${{ github.ref }}

	jobs:
	preview-docs:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
	with:
	fetch-depth: 0 # otherwise, you will failed to push refs to dest repo

	- name: Set up Python 3.
	uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
	with:
	# Note: We wrap the `3.10` in quotes so the YAML parser doesn't interpret
	# it as a float and convert it into `3.1`.
	python-version: "3.10"

	- name: Install uv
	uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0

	- name: Install Python dependencies.
	run: uv sync --locked

	- name: Regenerate schema
	run: \|
	make schema-build project/json/nmdc_submission_schema.json

	- name: Build documentation.
	run: \|
	mkdir -p docs
	touch docs/.nojekyll
	make gendoc
	uv run mkdocs build -d dist

	- name: Upload artifact
	uses: actions/upload-pages-artifact@fc324d3547104276b827a68afc52ff2a11cc49c9 # v5.0.0
	with:
	path: dist

	- name: Deploy preview
	uses: rossjrw/pr-preview-action@ffa7509e91a3ec8dfc2e5536c4d5c1acdf7a6de9 # v1.8.1
	with:
	source-dir: dist/
	preview-branch: gh-pages

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