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MNT: Unpin dependencies and refactor packaging #770

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@fepegar fepegar commented Jan 25, 2023

Unpinning dependencies so the library can be easily used by other libraries.

Also, refactoring packaging to more modern Python standards.

TODO:

  • Update docs to point to specific tag/branch/version for BioViL reproducibility

@fepegar fepegar changed the title Unpin dependencies and refactor packaging MNT: Unpin dependencies and refactor packaging Jan 25, 2023
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codecov bot commented Jan 25, 2023

Codecov Report

Merging #770 (03156e1) into main (ed8886d) will decrease coverage by 0.26%.
The diff coverage is n/a.

❗ Current head 03156e1 differs from pull request most recent head 6e4b68f. Consider uploading reports for the commit 6e4b68f to get more accurate results

Impacted file tree graph

Flag Coverage Δ
hi-ml-multimodal 86.84% <ø> (-0.09%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
...path/src/health_cpath/utils/analysis_plot_utils.py 30.55% <0.00%> (-4.17%) ⬇️
hi-ml-cpath/src/health_cpath/models/transforms.py 78.26% <0.00%> (-2.93%) ⬇️
...ml-cpath/src/health_cpath/datasets/base_dataset.py 84.49% <0.00%> (-2.33%) ⬇️
hi-ml-azure/src/health_azure/himl.py 25.07% <0.00%> (-1.95%) ⬇️
hi-ml/src/health_ml/runner.py 83.67% <0.00%> (-1.05%) ⬇️
hi-ml-cpath/src/health_cpath/utils/plots_utils.py 80.70% <0.00%> (-0.87%) ⬇️
hi-ml-cpath/src/health_cpath/utils/viz_utils.py 86.46% <0.00%> (-0.53%) ⬇️
...src/health_cpath/configs/classification/BaseMIL.py 84.09% <0.00%> (-0.47%) ⬇️
hi-ml-cpath/src/health_cpath/utils/output_utils.py 74.35% <0.00%> (-0.39%) ⬇️
...timodal/src/health_multimodal/image/model/model.py 93.16% <0.00%> (-0.23%) ⬇️
... and 19 more

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