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127 changes: 127 additions & 0 deletions callbacks/image_viewer.py
Original file line number Diff line number Diff line change
Expand Up @@ -602,3 +602,130 @@ def reset_figure_view(n_clicks, annotation_store):
"yaxis.range[1]": image_center_coor["y0"],
}
return new_figure, relayout_data

@callback(
Output("image-viewer", "figure", allow_duplicate=True),
Output('tracer-slider', 'max'),
Input('tracer-slider', 'value'),
Input('Qlty-window', 'value'),
Input('Qlty-step', 'value'),
State("image-viewer", "figure"),
State("image-metadata", "data"),
prevent_initial_call=True,
)
def update_figure_and_opacity(tracer_val ,window_size, step_size, fig, image_metadata):
"""
This callback will update the slider value and the image to display the qlty 2D visualization
when the slider, the window size, or the steps size is changed. It uses a slider to display
the patches in a spriral pattern to better understand the overlap. It does not save the patches
as shapes it only displays them.
"""
if not(window_size) or not(step_size) or not(fig):
raise PreventUpdate

# Deletes old display patches that have a name that starts with Patch
# to restart when the slider, window size, or step size are updated
# Should not effect annotations
shapes = fig['layout'].get('shapes')

if shapes:
shapes = [shape for shape in shapes if shape.get('name') is None or not shape.get('name').startswith("Patch")]
fig['layout'].update(shapes=shapes)

new_shapes = fig['layout'].get('shapes', [])


img_width, img_height = image_metadata["size"]

qlty_window = int(window_size)
qlty_step = int(step_size)
qlty_border = 0

qlty_object = qlty2D.NCYXQuilt(
X=img_width,
Y=img_height,
window=(qlty_window, qlty_window),
step=(qlty_step, qlty_step),
border=(qlty_border, qlty_border),
)

num_steps = qlty_object.get_times()
num_patches = num_steps[0] * num_steps[1]

# Returns the patch order so that they occur in a spiral and in the correct placemet
patches = spiral_coordinates(num_steps[0], num_steps[1], tracer_val)[:tracer_val]

colors = ['RoyalBlue', 'Red']
color_index = 0

# TODO:
# Uncomment once get_patch_boundries is a part of qlty
# start_y_list, stop_y_list, start_x_list, stop_x_list = qlty_object.get_patch_boundaries()


# Changes the order because the orientation of the segmentation app is flipped
for yy in range(num_steps[0] - 1, -1, -1):
for xx in range(num_steps[1] - 1, -1, -1):
color_index = 1 - color_index
if (yy, xx) in patches:
start_y = min(yy * qlty_step, img_height - qlty_window)
start_x = min(xx * qlty_step, img_width - qlty_window)
stop_y = start_y + qlty_window
stop_x = start_x + qlty_window
# TODO:
# Uncomment once get_patch_boundries is a part of qlty
# start_y = start_y_list[yy]
# stop_y = stop_y_list[yy]
# start_x = start_x_list[xx]
# stop_x = stop_x_list[xx]



if start_y >= 0 and start_x >=0 and stop_y <= img_height and stop_x <= img_width:
new_shapes.append(dict(
type="rect",
xref="x",
yref="y",
x0=-start_x + img_width,
x1=-stop_x + img_width,
y0=start_y,
y1=stop_y,
line=dict(color="Black", width=2),
fillcolor=colors[color_index],
opacity=0.2,
name="Patch " + f"({yy},{xx})",
layer="above"
))

fig['layout'].update(shapes=new_shapes)
return fig, num_patches

def spiral_coordinates(rows, cols, tracer_val):
center_x, center_y = rows // 2, cols // 2
# center_x, center_y = 0, 0

spiral_path = [(center_x, center_y)]

directions = [(0, 1), (1, 0), (0, -1), (-1, 0)]
direction_index = 0

step_size = 1
steps_taken = 0

while len(spiral_path) < tracer_val:
dx, dy = directions[direction_index]

for _ in range(step_size):
center_x += dx
center_y += dy
if 0 <= center_x < rows and 0 <= center_y < cols:
spiral_path.append((center_x, center_y))
if len(spiral_path) == tracer_val:
break

direction_index = (direction_index + 1) % 4
steps_taken += 1

if steps_taken % 2 == 0:
step_size += 1
return spiral_path
58 changes: 58 additions & 0 deletions components/control_bar.py
Original file line number Diff line number Diff line change
Expand Up @@ -586,6 +586,64 @@ def layout():
dmc.Space(h=20),
],
),
_accordion_item(
"Display Qlty 2D Grid Settings",
"mdi:grid",
"display-grid",
id="display-grid-controls",
children=[
dmc.Text(
"Display Grid Settings",
size="sm",
align="right",
color="#9EA4AB",
),
dmc.Space(h=15),
dmc.NumberInput(
id="Qlty-window",
label="Qlty Window",
placeholder="Enter window size...",
value=64,
min=0,
max=4096,
step=1,
),
dmc.Space(h=15),
dmc.NumberInput(
id="Qlty-step",
label="Qlty Step",
placeholder="Enter step size...",
value=32,
min=0,
max=4096,
step=1,
),
dmc.Space(h=15),
html.Div(
children=[
dmc.Text("Qlty Slider", size="sm", align="center", color="#9EA4AB"),
dmc.Slider(
id="tracer-slider",
value=0,
min=0,
max=1,
step=1,
color="gray",
size="sm",
style={"width": "225px"},
),
],
className="flex-row",
style={
"justifyContent": "space-evenly",
"padding": "2.5px",
"border": "1px solid #EAECEF",
"borderRadius": "5px",
},
),
dmc.Space(h=20)
],
),
_accordion_item(
"Model configuration",
"carbon:ibm-watson-machine-learning",
Expand Down