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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

Welcome to the Monarch Initative!

The Monarch Initiative is an international consortium that leads key biological and biomedical standards and semantic data integration technologies. Monarch resources and integrated data are also foundational to many downstream applications and contexts; we work closely with a variety of stakeholders and resource-development communities to capture feedback and make improvements. To maximize utility and impact, the Monarch platform is composed of multiple open-source, open-access components. We promote provenance and transparency, enhanced use of standards and new technologies and improved data accessibility, end-user utility, and data submission. Please visit the Monarch website to learn more and try our tools and resources: https://monarchinitiative.org/

If you need help or have questions about Monarch, please make a ticket at our helpdesk or email us at info@monarchinitiative.org.

Find ways to get involved at https://monarchinitiative.org/community/get-involved

See our pinned repositories below for quick access to our main code bases, or use the search bar to find a specific code repository.

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Pinned Loading

  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 311 67

  2. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 36 8

  3. koza koza Public

    Data transformation framework for LinkML data models

    Python 66 6

  4. dismech dismech Public

    Disease Mechanisms KB

    HTML 30 6

  5. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7 1

  6. ontogpt ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    Jupyter Notebook 925 119

Repositories

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