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add venom soft tissue disorders #10350

add venom soft tissue disorders

add venom soft tissue disorders #10350

Workflow file for this run

# This is a basic workflow to help you get started with Actions
name: CI
# Controls when the action will run.
on:
# Triggers the workflow on push or pull request events but only for the master branch
# push:
# branches: [ master ]
pull_request:
branches: [ master ]
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# This workflow contains a single job called "ontology_qc"
ontology_qc:
# The type of runner that the job will run on
runs-on: ubuntu-latest
container: obolibrary/odkfull:v1.6
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v4
with:
fetch-depth: 1
- name: Normalize mondo-edit.obo
run: |
cd src/ontology
make NORM && mv NORM mondo-edit.obo
- name: Fail if mondo-edit.obo is not normalized
run: |
cd src/ontology
if ! git diff --quiet -- mondo-edit.obo; then
echo "::error file=src/ontology/mondo-edit.obo::mondo-edit.obo is not normalized. Comment /normalize-mondo-edit to run normalization, or run make NORM && mv NORM mondo-edit.obo yourself and commit the changes."
git --no-pager diff -- mondo-edit.obo
exit 1
fi
- name: Run ontology QC checks
env:
DEFAULT_BRANCH: master
run: |
cd src/ontology
make GITHUB_ACTION=true IMP=false PAT=false test -B