Add FACETS extension to CNV parser; changed the index_data.py script so it can be called outside of the folder#104
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aleighbrown wants to merge 6 commits intomorrislab:masterfrom
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Add FACETS extension to CNV parser; changed the index_data.py script so it can be called outside of the folder#104aleighbrown wants to merge 6 commits intomorrislab:masterfrom
aleighbrown wants to merge 6 commits intomorrislab:masterfrom
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Script can now be called from a different folder, allowing easier integration into a pipeline
Script which takes the original cnv.txt and ssm.txt input files into PWGS and the summary, mutass.zip file, and parses into a mutation per population for each of the top k trees. Also outputs the llh per tree
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