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@moshi4 moshi4 commented Aug 23, 2025

Added

  • Added tooltip display function in jupyter using ipympl
  • Added tooltip extra dependencies (pip install pycirclize[tooltip])

Changed

  • Dropped python3.9 support
  • Switched package manater rye to uv
  • Changed the default display color of heatmap values to white or black depending on the background color

Fixed

@moshi4 moshi4 merged commit f0fae92 into main Aug 23, 2025
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Coverage

Coverage Report
FileStmtsMissCoverMissing
src/pycirclize
   annotation.py72297%23–24
   circos.py4074589%96–104, 137, 142, 147, 186–193, 270, 296, 306, 319, 436, 445–449, 460, 469, 476–478, 750–752, 880–881, 1028, 1068–1071, 1103, 1175, 1271–1277
   patches.py1301390%33–41, 273–274, 310, 334, 401–402
   sector.py1891592%159, 161, 221, 292, 294, 372–374, 441–442, 449, 479–483
   tooltip.py1126542%125–166, 175–187, 192–193, 209–238, 249–253
   track.py5235290%302, 354, 420, 487, 583, 646, 671, 709, 711, 770, 819, 831, 871, 901–904, 961, 965, 973, 993–995, 1000, 1004, 1048, 1052, 1060, 1183, 1185, 1199–1202, 1215, 1268, 1270, 1287, 1411, 1417, 1420–1421, 1426–1428, 1437, 1495, 1548–1551, 1554–1556
   tree.py2865282%88, 90, 92–93, 134, 188–189, 196, 200, 244–250, 279, 283, 287, 484–516, 530, 532–533, 551, 553–554, 577, 585, 686
src/pycirclize/parser
   bed.py39392%38, 62–63
   genbank.py1963483%49, 53, 60–63, 66, 69, 127–129, 176–177, 283, 292, 331–337, 357, 366, 415–416, 418–421, 426, 451–454
   gff.py2004677%48, 58, 60, 105, 212–249, 286–287, 289–292, 327, 334, 393–396, 425, 483, 532–534
   matrix.py97694%39–40, 94, 118, 127, 235
   table.py88199%89
src/pycirclize/utils
   dataset.py891385%48, 59, 107–108, 119, 216–229
   helper.py59592%87, 154, 158, 175–176
   plot.py77988%29, 34, 155–159, 205–206
TOTAL263336186% 

Tests Skipped Failures Errors Time
85 0 💤 0 ❌ 0 🔥 20.990s ⏱️

@moshi4 moshi4 deleted the develop branch August 23, 2025 11:43
@moshi4 moshi4 changed the title Bump to v1.10.1 Bump to v1.10.0 Oct 3, 2025
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2 participants