Running TA to get segmentation need help

[Barrano247]

Hello and thank you,

I am trying to use tissue miner on some movies, I'm using this documentation https://mpicbg-scicomp.github.io/tissue_miner/user_manual/TM_R-UserManual.html#tissueminer-api-configuration

The link to the TA help guide is down. I don't know exactly which operations to use in TA to get the required files for running tissue miner. My TM works on the example data so I know that the issue isn't TM itself (I later realized that I need to run TA before running TM even if I have images segmented via another software, which is an issue in itself IMO because there are now better segmentation options than TA)

If someone could direct me to resources that explain how to run TA that would be most appreciated.

Thanks,
Christian