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Tissue Analyzer plugin fails to load in Fiji – Missing JAR files prevent TissueMiner from running

Status: Open.

#56 In mpicbg-scicomp/tissue_miner;

· naheedn opened on Apr 27, 2026

Mix of tab and spaces in tm.snkmk

Status: Open.

#54 In mpicbg-scicomp/tissue_miner;

· boileaum opened on Feb 14, 2025

Running TA to get segmentation need help

Status: Open.

#52 In mpicbg-scicomp/tissue_miner;

· Barrano247 opened on Sep 27, 2022

Missing input files

Status: Open.

#51 In mpicbg-scicomp/tissue_miner;

· fabricesenger opened on Mar 7, 2022

MissingInputException in line 54 of /tissue_miner/workflow/tm.snkmk

Status: Open.

#46 In mpicbg-scicomp/tissue_miner;

· helpkate1991 opened on Jul 21, 2020

Improve TM based on user feedback

question

Status: Open.

#42 In mpicbg-scicomp/tissue_miner;

· holgerbrandl opened on Jul 19, 2018

User-defined config files not recognized anymore in TM

bug

enhancement

Status: Open.

#36 In mpicbg-scicomp/tissue_miner;

· etournay opened on Jul 10, 2017

ggplot has no subset argument anymore in v2

bug

enhancement

Status: Open.

#7 In mpicbg-scicomp/tissue_miner;

· holgerbrandl opened on Jan 25, 2016

Inconsistent division tracking

bug

enhancement

Status: Open.

#6 In mpicbg-scicomp/tissue_miner;

· holgerbrandl opened on Nov 25, 2015

Querying dbonds for the first time is very slow

bug

wontfix

Status: Open.

#5 In mpicbg-scicomp/tissue_miner;

· holgerbrandl opened on Nov 24, 2015