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Mskcc custom/splitfastqbylane #87
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Mskcc custom/splitfastqbylane #87
anoronh4
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commits into
mskcc-omics-workflows:develop
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anoronh4:mskcc_custom/splitfastqbylane
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This is a custom module using awk to split a single fastq or fastq pair into multiple fastqs or fastq pairs, where each comes from a single lane+flowcell source. This is for when the raw data input is merged. This tool uses an awk statement to read the input file and direct the output to different files based on the content of the fastq header. a version of this code is currently implemented in TEMPO
Further described here: nf-core#2836
versions.yml
file.label
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware