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Releases: mskcc/Albany

Release v2.0.1

12 Sep 00:15
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What's New in v2.0.1

Added

  • Environment zone detection utility in limsETL.py with get_zone_from_env() function
  • FASTQ folder root constants for JUNO and IRIS zones
  • Claude Code project documentation (CLAUDE.md)
  • Dynamic zone detection for path replacement

Changed

  • Enhanced FASTQ path handling with zone-aware path replacement
  • Improved project output formatting to use f-strings
  • Updated IRIS zone detection to use prefix matching instead of exact match
  • Refactored path handling for better IRIS zone compatibility

Fixed

  • IRIS zone detection now handles zone variants robustly using startswith("IRIS")
  • Null value handling in sample metadata parsing for species, baitSet, and investigatorSampleId fields
  • Auto-generation of investigatorSampleId from file path when missing

This release includes comprehensive improvements to environment zone detection and FASTQ path handling, making the pipeline more robust across different computing environments.