Releases: mskcc/Albany
Releases · mskcc/Albany
Release v2.0.1
What's New in v2.0.1
Added
- Environment zone detection utility in
limsETL.py
withget_zone_from_env()
function - FASTQ folder root constants for JUNO and IRIS zones
- Claude Code project documentation (
CLAUDE.md
) - Dynamic zone detection for path replacement
Changed
- Enhanced FASTQ path handling with zone-aware path replacement
- Improved project output formatting to use f-strings
- Updated IRIS zone detection to use prefix matching instead of exact match
- Refactored path handling for better IRIS zone compatibility
Fixed
- IRIS zone detection now handles zone variants robustly using
startswith("IRIS")
- Null value handling in sample metadata parsing for species, baitSet, and investigatorSampleId fields
- Auto-generation of investigatorSampleId from file path when missing
This release includes comprehensive improvements to environment zone detection and FASTQ path handling, making the pipeline more robust across different computing environments.