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Update mass, volume disregarding sample stage. #295

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Update mass, volume disregarding sample stage. #295

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0c84c8f
Update mass, volume disregarding sample stage.
FahimehMirhaj Feb 21, 2022
acde6da
Sample stage conition disabled.
FahimehMirhaj Feb 22, 2022
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4 changes: 2 additions & 2 deletions src/main/java/org/mskcc/limsrest/service/GetRequestTrackingTask.java
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Original file line number Diff line number Diff line change
Expand Up @@ -237,9 +237,9 @@ private ProjectSampleTree createWorkflowTree(WorkflowSample root, ProjectSampleT

// Add any DNA updates
String rStage = root.getStage();
if(STAGE_LIBRARY_PREP.equals(rStage) || STAGE_LIBRARY_CAPTURE.equals(rStage)){
//if(STAGE_LIBRARY_PREP.equals(rStage) || STAGE_LIBRARY_CAPTURE.equals(rStage)){
tree.enrichQuantity(root.getRecord(), rStage);
}
//}

if (hasFailedQcStage(root)) {
root.setFailed(Boolean.TRUE);
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4 changes: 2 additions & 2 deletions src/main/java/org/mskcc/limsrest/service/requesttracker/ProjectSampleTree.java
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Expand Up @@ -84,7 +84,7 @@ public void enrichQuantity(DataRecord record, String stage) {
/**
* The stages we care about are library prep (where DNA/RNA is input) & library capture (where library is input)
*/
if (STAGE_LIBRARY_PREP.equals(stage) || STAGE_LIBRARY_CAPTURE.equals(stage)) {
//if (STAGE_LIBRARY_PREP.equals(stage) || STAGE_LIBRARY_CAPTURE.equals(stage)) {
String stageKey = stageToMaterialMap.get(stage);
if(!this.sampleData.containsKey(stageKey)){
// Add concentration volume
Expand All @@ -98,7 +98,7 @@ public void enrichQuantity(DataRecord record, String stage) {
this.sampleData.put(stageKey, createQtyMap(remainingVolume, mass, concentration, concentrationUnits));
}
}
}
//}
}

public boolean isQcIgoComplete() {
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