Open
Conversation
aef-
commented
Mar 19, 2021
Collaborator
Author
aef-
left a comment
There was a problem hiding this comment.
Have to add obfuscation to DMP BAM filename and path.
ionox0
reviewed
Mar 22, 2021
| # pip install git+https://github.com/mskcc/beagle_cli.git@develop | ||
| # pip install -r requirements-cli.txt # <- what happened to this file? | ||
|
|
||
| BEAGLE_BACKUP_DB_FOLDER=/juno/work/ci/beagle_backups/ |
Member
There was a problem hiding this comment.
not sure if this just makes it more complicated than necessary but this could maybe be an env var
Member
|
@aef- just FYI I used this locally and it worked for me! |
ionox0
approved these changes
Mar 26, 2021
7accfd3 to
14db81b
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This takes the latest DB dump and loads it into your local DB. I also added a flag to the
pg_dumpcommand in our back-up cronjob that reduces the total size of the dump. Information on that can be viewed here: https://dan.langille.org/2013/06/10/using-compression-with-postgresqls-pg_dump/