Search results

Long reads support

Status: Open.

#34 In mskilab-org/fragCounter;

· yelingqun opened on Sep 26, 2025

Calculate the tumor/normal coverage ratio.

Status: Open.

#33 In mskilab-org/fragCounter;

· pengxi1209 opened on Apr 22, 2025

Cannot Install fragCounter

Status: Open.

#32 In mskilab-org/fragCounter;

· LalitDNA opened on Mar 15, 2025

GC and mappability corrected read depth data for hg38

Status: Open.

#28 In mskilab-org/fragCounter;

· Bio-LiHe opened on Nov 20, 2023

calculate ratio between tumor and normal sample’s WGS read counts

Status: Open.

#24 In mskilab-org/fragCounter;

· Bio-LiHe opened on Jan 30, 2023

Getting error 'Killed' upon running in docker container

Status: Open.

#22 In mskilab-org/fragCounter;

· shashkat opened on Oct 13, 2022

Error in the final step (R): 'by' appears to evaluate to column names but isn't c() or key()'

Status: Open.

#20 In mskilab-org/fragCounter;

· Giuseppe1995 opened on May 17, 2022

invalid class "BigWigFile" error when running frag with bundled example files

Status: Open.

#19 In mskilab-org/fragCounter;

· hillan141 opened on Feb 10, 2022

data.table breaks fragCounter

Status: Open.

#16 In mskilab-org/fragCounter;

· jamesdalg opened on Oct 19, 2021

GC and mappability RDS files for hg19 WGS missing?

Status: Open.

#15 In mskilab-org/fragCounter;

· ehjChun opened on Aug 24, 2021

unable to call "samtools"

Status: Open.

#14 In mskilab-org/fragCounter;

· ehjChun opened on Aug 24, 2021

Allow users to provide coverage data and only perform GC and mappability correction

Status: Open.

#12 In mskilab-org/fragCounter;

· ShaiberAlon opened on Jul 8, 2021