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Feature request: downsampling to X reads

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#542 In nanoporetech/modkit;

· billytcl opened on Nov 24, 2025

smoothing

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#541 In nanoporetech/modkit;

· wjj8-a opened on Nov 20, 2025

Modkit motif search

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#540 In nanoporetech/modkit;

· rania-o opened on Nov 17, 2025

Random failures in <code>test_repair_regression</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#539 In nanoporetech/modkit;

· Flamefire opened on Nov 14, 2025

modkit pileup --interval-size 1000000 --chunk-size 100

troubleshootingworkflow and data preparation questionsworkflow and data preparation questions

Status: Open.

#537 In nanoporetech/modkit;

· blipinskiaima opened on Nov 10, 2025

How to filter the 6mA <code>pileup.bed</code> file?

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#534 In nanoporetech/modkit;

· yyzhou4535 opened on Nov 7, 2025

Question: position in extract full

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#533 In nanoporetech/modkit;

· privefl2 opened on Nov 6, 2025

More precision on how are base modification probabilities calculated with Modkit

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#532 In nanoporetech/modkit;

· OceaneMion opened on Nov 6, 2025

Unexcepted output with modkit adjust-mods --convert h m

bugSomething isn't workingSomething isn't working

Status: Open.

#531 In nanoporetech/modkit;

· privefl2 opened on Nov 5, 2025

Strand count asymmetry in modkit motif compared to find-motifs

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#530 In nanoporetech/modkit;

· angelluigi opened on Nov 4, 2025

Calculate methylation coverage genome wide

questionLooking for clarification on inputs and/or outputsLooking for clarification on inputs and/or outputs

Status: Open.

#529 In nanoporetech/modkit;

· OceaneMion opened on Nov 4, 2025

Error while running entropy as in help

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#528 In nanoporetech/modkit;

· assafgrw opened on Nov 4, 2025