Samtools code for modkit repair

[sandraionescu]

https://nanoporetech.github.io/modkit/intro_repair.html

Commands provided in link above to sort BAM files using samtools prior to repair seem to be missing 'sort':

the two BAM files need to be sorted
samtools -n trimmed.bam -O BAM > trimed_read_sort.bam
samtools -n basecalls_5mC_5hmC.bam -O BAM > basecalls_5mC_5hmC_read_sort.bam

[ArtRand]

@sandraionescu
Ah ha! Thanks for catching that!