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Issues list

how to use bedmethyl tobigwig..? troubleshooting workflow and data preparation questions
#396 opened Mar 15, 2025 by Seongmin-Jang-1165
8
BigWig Generation Failure Using "modkit bedmethyl tobigwig" Despite Correct Sorting troubleshooting workflow and data preparation questions
#393 opened Mar 12, 2025 by lucagu1965
2
methylation_entropy test failure troubleshooting workflow and data preparation questions
#383 opened Feb 24, 2025 by verdurin
6
failed to read record from bam information, truncated record in SAM/BAM/CRAM file troubleshooting workflow and data preparation questions
#375 opened Feb 17, 2025 by ziphra
10
Dmr pair segment misses clearly differentially methylated region DMR modkit dmr troubleshooting workflow and data preparation questions
#367 opened Feb 6, 2025 by Aarhus-kga
2
fetching sequence failed, FASTA read interval was out of bounds troubleshooting workflow and data preparation questions
#353 opened Jan 26, 2025 by TKsh6
1
Error during merging bedmethyl files troubleshooting workflow and data preparation questions
#342 opened Jan 14, 2025 by ralanany
1
no m6A sites found in results question Looking for clarification on inputs and/or outputs troubleshooting workflow and data preparation questions
#331 opened Jan 4, 2025 by baibhav-bioinfo
1
Out of memory in modkit find-motifs troubleshooting workflow and data preparation questions
#323 opened Dec 27, 2024 by hannan666666
4
Failed to read fasta index (error 2) troubleshooting workflow and data preparation questions
#319 opened Dec 20, 2024 by ramnageena11
5
Error (0658) troubleshooting workflow and data preparation questions
#315 opened Dec 11, 2024 by ramnageena11
2
High memory usage of modkit extract full troubleshooting workflow and data preparation questions
#306 opened Nov 27, 2024 by Shians
8
No methylation information was calculated for some reads troubleshooting workflow and data preparation questions
#299 opened Nov 13, 2024 by Wshengquan
3
dmr multi will not create necessary directories bug Something isn't working troubleshooting workflow and data preparation questions
#294 opened Nov 5, 2024 by Yang990-sys
13
Install failed: fatal error: '-fuse-linker-plugin', but liblto_plugin.so not found troubleshooting workflow and data preparation questions
#291 opened Oct 28, 2024 by liuyang2006
1
Indexing error in dmr multi bug Something isn't working DMR modkit dmr troubleshooting workflow and data preparation questions
#285 opened Oct 18, 2024 by Ge0rges
4
modkit results look off for CHG and CHH contexts - plant methylation troubleshooting workflow and data preparation questions
#234 opened Jul 19, 2024 by colindaven
5
Version mismatch troubleshooting workflow and data preparation questions
#226 opened Jul 7, 2024 by rugilemat
2
Find-motifs error: memory allocation of 61203283984 bytes failed troubleshooting workflow and data preparation questions
#225 opened Jul 5, 2024 by hassebossenbroek
4
How to interpret failed reads during modkit extract troubleshooting workflow and data preparation questions
#220 opened Jun 29, 2024 by lkwhite
7
Zero reads in index error troubleshooting workflow and data preparation questions
#211 opened Jun 19, 2024 by setshabaTaukobong
5
Error! Parsing Error: Error { input: "m\t1", code: Digit } troubleshooting workflow and data preparation questions
#209 opened Jun 18, 2024 by saky7009
3
How does Modkit handle Large Genome Data? question Looking for clarification on inputs and/or outputs troubleshooting workflow and data preparation questions
#190 opened May 27, 2024 by Yang990-sys
5
num-reads not working troubleshooting workflow and data preparation questions
#179 opened May 5, 2024 by ShokodkoMariia
3
failed to get modbase info for record ..., Skipped: AUX data not found troubleshooting workflow and data preparation questions
#159 opened Apr 10, 2024 by ArnavBharti
22
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