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Use csi not bai bam indices in mini_align#51

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Use csi not bai bam indices in mini_align#51
colindaven wants to merge 1 commit intonanoporetech:masterfrom
colindaven:master

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@colindaven colindaven commented Jan 4, 2024

Large chromosomes cannot be indexed using bai indices, so a csi index is created here. This is useful for many plants and other organisms with long chr.

This is important for using long read polishing with medaka.

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