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27 changes: 27 additions & 0 deletions src/napari_tiff/napari_tiff_metadata.py
Original file line number Diff line number Diff line change
Expand Up @@ -175,6 +175,8 @@ def get_tiff_metadata(tif: TiffFile) -> dict[str, Any]:
if channel_axis is not None and shape[channel_axis] > 1:
contrast_limits = [contrast_limits] * shape[channel_axis]

scale, units = get_scale_and_units_from_tiff(page, axes)

kwargs = dict(
rgb=rgb,
channel_axis=channel_axis,
Expand All @@ -184,6 +186,7 @@ def get_tiff_metadata(tif: TiffFile) -> dict[str, Any]:
contrast_limits=contrast_limits,
blending=blending,
visible=visible,
units=units,
)
return kwargs

Expand Down Expand Up @@ -431,6 +434,30 @@ def get_time_units_seconds(value: float, unit: str = None) -> float:
return value_s


def get_scale_and_units_from_tiff(page, axes):
"""Extract scale and units from TIFF tags using tifffile properties."""
scale_dict = {}
units_dict = {}

if page.resolutionunit == 1:
# 1 means no unit, but tifffile uses meter as the default
x_res, y_res = page.get_resolution()
units_dict["X"] = "pixel"
units_dict["Y"] = "pixel"
else:
x_res, y_res = page.get_resolution(unit='micrometer')
units_dict["X"] = "µm"
units_dict["Y"] = "µm"

scale_dict["X"] = 1.0 / x_res
scale_dict["Y"] = 1.0 / y_res

scale = tuple(scale_dict.get(ax, 1.0) for ax in axes if ax not in "CS")
units = tuple(units_dict.get(ax, "pixel") for ax in axes if ax not in "CS")

return scale, units


def ensure_list(x):
if not isinstance(x, (list, tuple)):
x = [x]
Expand Down