Trim records from otu-table that don't meet set threshold values.
USEARCH should be installed. This will be the case if make OTU table was priorly installed.
If not, follow the instructions there.
Clone this repo in your Galaxy Tools directory:
git clone https://github.com/naturalis/galaxy-tool-otutab_trim
Make sure the scripts are executable:
chmod 755 galaxy-tool-otutab_trim/otutab_trim.sh
Append the file tool_conf.xml:
<tool file="/path/to/Tools/galaxy-tool-otutab_trim/otutab_trim.xml" />
Depending on your setup the ansible.builtin.git module could be used.
Install the tool by including the following in your dedicated *.yml file:
- repo: https://github.com/naturalis/galaxy-tool-otutab_trim
file: otutab_trim.xml
version: master