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nat 1.7.0

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@jefferis jefferis released this 04 Jul 08:38
· 1144 commits to master since this release
v1.7.0
3141ccc

CRAN release

  • implement extraction/replacement of the data.frame attached to a neuronlist
    using the [ operator (#217)
  • fix xform of image data (#143, #199)
  • implement handling of inverted (swapped i.e. reference to sample)
    registrations in xform(image) (#199)
  • normalise handling of registration sequences and inversion in
    xform/image/points (all 3 expect reg to be in sample to ref order and for any
    individual registration to be marked with swap=T if it is ref->sample)
  • read.nrrd no longer returns an im3d (use read.im3d) (#238)
  • teach write.nrrd to handle more diverse inputs (including #242)
  • add reading of detached nrrds (#236, #237)
  • add ability to write detached nrrds
  • add ability to make a detached nrrd from a compatible amira file on disk (#243)
  • new function is.im3d
  • fix cmtk.targetvolume for templatebrain objects (#241)
  • fix cmtk.targetvolume for --target-grid specification (#240)
  • fix names for [.neuronlistfh with null df (#250)
  • plot.neuron can cope with some NA coordinates
  • teach plot.neuron(list) to cope with NA points (#247)
  • boundingbox has an na.rm argument (#246)
  • teach droplevels.neuronlist to use extra arg (#249)
  • teach plot.neuron to plot soma (#245)
  • fix cmtk.call for numeric args (#235)
  • set read.hxsurf RegionChoice="both" by default
  • document return values of cmtk.statistics in more detail (#252)
  • support for igraph 1.0 (#248)
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