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NML export#126

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perlman wants to merge 8 commits into
navis-org:masterfrom
bocklab:write_nml
Draft

NML export#126
perlman wants to merge 8 commits into
navis-org:masterfrom
bocklab:write_nml

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@perlman

@perlman perlman commented Oct 27, 2023

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Support export of the NML format used in WebKnossos.

This is work in progress. This is just a very rough prototype to output a single neuron.

  • Basic NML export
  • Zip'd NML export
  • Multiple skeletons in a single NML file (optional)
  • Test data in WebKnossos
  • Support the full range of inputs (single neuron, neuron list, etc)
  • Add NML tests

Example:

neuron = navis.read_swc("1.swc")
navis.write_nml(neuron, "1.nml")

@perlman

perlman commented Jun 24, 2024

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@conochur Let's get this to a state for merging. =)

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2 participants