Skip to content

Improve reading from tar archives #178

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
schlegelp merged 5 commits into from
Jan 3, 2025
Merged

Improve reading from tar archives #178

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
7e18234
improve reading from tar files
schlegelp Jan 2, 2025
6d4390d
read_swc: deal with potential additional columns + formatting
schlegelp Jan 2, 2025
44e4c31
BaseReader: fix typo in parameter name
schlegelp Jan 3, 2025
4940a1e
tutorials: change URL download.brainlib.org:8811 -> download.brainima…
schlegelp Jan 3, 2025
5be8f96
i/o base: remove left-over on_error parameters, use self.errors instead
schlegelp Jan 3, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion docs/examples/0_io/tutorial_io_00_skeletons.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -75,7 +75,7 @@
# %%

# From an FTP folder:
nl = navis.read_swc('ftp://download.brainlib.org:8811/biccn/zeng/pseq/morph/200526/', limit=3)
nl = navis.read_swc('ftp://download.brainimagelibrary.org/biccn/zeng/pseq/morph/200526/', limit=3)


# !!! tip
Expand Down
2 changes: 1 addition & 1 deletion docs/examples/1_plotting/tutorial_plotting_06_cortex.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@
import navis

nl = navis.read_swc(
"ftp://download.brainlib.org:8811/biccn/zeng/pseq/morph/200526/",
"ftp://download.brainimagelibrary.org/biccn/zeng/pseq/morph/200526/",
limit=[f"{i}_transformed.swc" for i in ids], # Load only the files we need
fmt="{name,id:int}_transformed.swc", # Parse the name and id from the file name
)
Expand Down
Loading
Loading