Develop #175
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Develop #175
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…fore, it required creating sub files which were then stitched back together into the output, but since parallel code ran on top of that, we were stitching 2 layers of files, but only running on a chunk at a time, so essentially there was a loop only running once. This cuts out some of the extra loops we were running. Still need to stitch final files and produce final VCF
…r than it used to be
…ler bams first then stitching them together, like we were doing before.
172 fix vcf headers
Fixed and cleaned up tests
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Ran several tests. Everything is working pretty well. |
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Refactored parallelism to fix a few issues in the header.