0.2.0

0.2.0 - 2023-09-03

Changed

• Adapt to neurobagel query tools new outputs formats by using a participant
  and a dataset input files. #55 @Remi-Gau

Added

• [ENH] turns output into a yoda datalad dataset. #84 @Remi-Gau
• [ENH] pass dataset listings as list of strings via the CLI. #82 @Remi-Gau
• [ENH] Index dataset and return participant listing if not provided. #81 @Remi-Gau
• [ENH] Skip mriqc if requested. #80 @Remi-Gau
• [ENH] Add an "all" sub command that runs install, get and copy in sequence. #65 @Remi-Gau
• [ENH] Add a dockerfile for the package. #64 @Remi-Gau
• [ENH] Call MRIQC docker to regenerate group level plots after copying mriqc data. #32 @Remi-Gau
• [ENH] Create a bagel.csv file for a new cohort to list
  what pipeline has been run on which subject / session pair. #29 @Remi-Gau
• [ENH] Change output layout output to comply with recommendations
  from the "Mega" extension to BIDS. #24 @Remi-Gau
• [ENH] Implement the usage of a "bids filter file" to define "suffix groups"
  with their own datatype, BIDS entities and suffix and extensions
  to flexibly allow to copy data from any datatype for each dataset type. #35 @Remi-Gau
• [ENH] Allow to run without using any participant file.
  In this case all participants of each datasets are downloaded. #75 @Remi-Gau

Removed

• Only use the participants file and not the dataset listing file. #34 @Remi-Gau
• Change output layout output to now comply with recommendations
  from the "Mega" extension to BIDS. #24 @Remi-Gau