Add qsirecon 1.1.0 #8
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Added. Expect a merge conflict w/ the freewater branch - same line added in that PR |
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for more information, see https://pre-commit.ci
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michellewang
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Jul 24, 2025
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Codespell fails because there are typos in the descriptor but since they are typos from the pipeline developers we decided to leave them as they are
michellewang
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Jul 25, 2025
* initial version of qsirecon * dropped zenodo.json config * added pipeline to test file * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added default hpc.json * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: Michelle Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Aug 14, 2025
* update descriptor for bids-validator * add test * update test * ignore VS code settings * update descriptors and config files if needed * add workaround for bosh failing with dcm2bids 3.2.0 and heudiconv * Add qsirecon 1.1.0 (#8) * initial version of qsirecon * dropped zenodo.json config * added pipeline to test file * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * added default hpc.json * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: Michelle Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add fwDTI 2.0.0 (#7) * added files w/ pipeline name * added pipeline to test file * updated w/ zenodo config * fixed name, dropped old * Update tests/conftest.py add new version Co-authored-by: Michelle Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * dropped unused, previous versions; adjusted config * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * ignore qsirecon typos * address PR review comments * fix test * remove globbing from invocation --------- Co-authored-by: Michelle Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * update descriptor for dmri-freewater pipeline * update qsirecon * [BUG] Improve tests and fix bug in QSIRecon config (#22) * update tests to make them install the pipelines * fix qsirecon config missing variables * update tracker tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * flake8 --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --------- Co-authored-by: Brent McPherson <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Closes #4
Working version of files from SOBP hackathon.