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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    A Python toolbox for analysing body movements across space and time

    Python 139 38

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 21 14

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 28 4

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A package to manage electrophysiology analysis.

    Python 17 3

Repositories

Showing 10 of 61 repositories
  • spikewrap Public

    A package to manage electrophysiology analysis.

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 17 BSD-3-Clause 3 20 4 Updated Mar 12, 2025
  • python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    neuroinformatics-unit/python-cookiecutter’s past year of commit activity
    Python 28 BSD-3-Clause 4 15 1 Updated Mar 12, 2025
  • gsoc Public

    A repository for our participation in Google Summer of Code

    neuroinformatics-unit/gsoc’s past year of commit activity
    3 0 0 0 Updated Mar 12, 2025
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    neuroinformatics-unit/datashuttle’s past year of commit activity
    Python 21 BSD-3-Clause 14 46 (4 issues need help) 13 Updated Mar 12, 2025
  • neuroinformatics-unit.github.io Public

    Home website of the Neuroinformatics Unit

    neuroinformatics-unit/neuroinformatics-unit.github.io’s past year of commit activity
    7 BSD-3-Clause 0 16 3 Updated Mar 12, 2025
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 0 10 (1 issue needs help) 2 Updated Mar 12, 2025
  • movement Public

    A Python toolbox for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 139 BSD-3-Clause 38 101 (1 issue needs help) 26 Updated Mar 11, 2025
  • photon-mosaic Public

    Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices

    neuroinformatics-unit/photon-mosaic’s past year of commit activity
    Python 2 GPL-3.0 0 1 1 Updated Mar 10, 2025
  • scripts Public

    Small but useful scripts to share

    neuroinformatics-unit/scripts’s past year of commit activity
    Python 7 0 0 0 Updated Mar 7, 2025
  • HowTo Public

    NIU website on common software problems and their troubleshooting

    neuroinformatics-unit/HowTo’s past year of commit activity
    10 CC-BY-4.0 1 12 0 Updated Mar 7, 2025
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