NEUROPOLY DATABASE EXPLORATION AND STANDARDIZATION TOOLS

This repository hosts a collection of tools to interact with metadata contained in the several NEUROPOLY databases.

Main Goal Provide an exploration tool into every database, agnostic to the data structure (standard) and management software (e.g. DataLad, Git, etc.) used to store the data.

User guide

NeuroBagel node installation

NeuroPoly-DB CLI installation

Query and download datasets

Developer guide

Components of the project :

• [Database exploration] : Complete and structured deployment of a local NeuroBagel node, extended with NeuroPoly-specific imaging modality vocabulary.
• [Database ingestion]: A set of command line tools (under npdb) to ingest data into a local NeuroBagel node (currently supports Neurogitea indexed databases only).
• [Metadata standardization]: A set of command line tools (under npdb standardize) to manipulate common standards (e.g. BIDS, Bagel).

NeuroBagel

NeuroBagel deployment

NeuroBagel extensions

NeuroBagel management

NeuroPoly-DB CLI

NPDB CLI installation

Database ingestion

Metadata standardization