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Add docker runOptions to fix default root ownership issues #558

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maxulysse
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I think we might need to add docker runOptions, this seems to be an issue. cf: https://nextflow.slack.com/archives/C02TH6KNBCN/p1741604416453299

I think we might need to add docker runOptions, this seems to be an issue.
cf: https://nextflow.slack.com/archives/C02TH6KNBCN/p1741604416453299
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@ewels ewels added the question Further information is requested label Mar 11, 2025
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ewels commented Mar 11, 2025

I'd like to look into how #539 affects this first. Might be that we can have a separate devcontainers config for local development that doesn't use root, for example?

Might still need this PR as well, but either way I think that we should wait until the above is merged first for testing.

@vdauwera vdauwera added the environment Devcontainer, codespaces etc label Mar 12, 2025
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