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Fix ingest automation - #4

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joverlee521 merged 2 commits into
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fix-ingest-automation
Aug 3, 2026
Merged

Fix ingest automation#4
joverlee521 merged 2 commits into
mainfrom
fix-ingest-automation

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@joverlee521

@joverlee521 joverlee521 commented Aug 3, 2026

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Description of proposed changes

Prompted by conversation in Slack and testing of latest docker-image from nextstrain/docker-base#293.

Checklist

  • Checks pass
  • Update changelog

This was leading to errors in the workflow because the expected
Fasta file with the incorrect spelling does not exist.
Required in order to mark the top level of the pathogen repo so that
workflows can reach outside of the subdirectory for the shared scripts.
@joverlee521
joverlee521 merged commit 90d0e93 into main Aug 3, 2026
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@joverlee521
joverlee521 deleted the fix-ingest-automation branch August 13, 2026 23:50
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2 participants