imperial.config

// scflow/imperial specific profile config

params {
    // Config Params
    config_profile_description = 'Imperial College London - HPC - nf-core/scFlow Profile -- provided by nf-core/configs.'
    config_profile_contact     = 'NA'

    // Analysis Resource Params
    ctd_folder                 = "/rds/general/user/${System.getenv('USER')}/projects/ukdrmultiomicsproject/live/Analyses/scFlowResources/refs/ctd"
    ensembl_mappings           = "/rds/general/user/${System.getenv('USER')}/projects/ukdrmultiomicsproject/live/Analyses/scFlowResources/src/ensembl-ids/ensembl_mappings.tsv"
}

singularity {
    enabled    = true
    autoMounts = true
    cacheDir   = "/rds/general/user/${System.getenv('USER')}/projects/ukdrmultiomicsproject/live/.singularity-cache"
    runOptions = "-B /rds/,/rdsgpfs/,/rds/general/user/${System.getenv('USER')}/ephemeral/tmp/:/tmp,/rds/general/user/${System.getenv('USER')}/ephemeral/tmp/:/var/tmp"
}