Merge pull request #1038 from fbartusch/master

Make binac2 strict syntax compatible

Author: fbartusch

.github/workflows/main.yml

@@ -46,7 +46,6 @@ jobs:
           - "bi"
           - "bigpurple"
           - "bih"
-          - "binac"
           - "binac2"
           - "biohpc_gen"
           - "biowulf"

conf/binac.config

@@ -22,7 +22,7 @@ profiles {
             enabled      = true
             autoMounts   = true
             pullTimeout  = '120m'
-            cacheDir     = "/pfs/10/project/apptainer_cache/${USER}"
+            cacheDir     = "/pfs/10/project/apptainer_cache/${System.getenv('USER')}"
             envWhitelist = 'CUDA_VISIBLE_DEVICES'
         }
 

conf/binac2.config

@@ -46,9 +46,6 @@ profiles {
     bih {
         includeConfig "${params.custom_config_base}/conf/bih.config"
     }
-    binac {
-        includeConfig "${params.custom_config_base}/conf/binac.config"
-    }
     binac2 {
         includeConfig "${params.custom_config_base}/conf/binac2.config"
     }