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The conda lock files are missing the pip dependencies#80

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mashehu wants to merge 11 commits into
nf-core:devfrom
mashehu:update-containers
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The conda lock files are missing the pip dependencies#80
mashehu wants to merge 11 commits into
nf-core:devfrom
mashehu:update-containers

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@mashehu
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@mashehu mashehu commented Jan 23, 2026

added the local conda lock files and udpate meta.yml with nf-core/tools#3954 and new configs generated with nf-core/tools#3955

@JudithBernett
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Thanks for looking into this again!! As far as I can see, the condalock files are still missing the pip dependencies (-> the drevalpy dependency). https://community.seqera.io/t/condalock-files-generated-by-wave/2508/4

@mashehu
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mashehu commented Jan 26, 2026

I think I found a way of keeping the pip dependencies by switching the build-template, but unfortunately I ran then into other hurdles on the way... but I will keep working on this. Since the conda containers are working (see passing tests) and listed in the environmt.yml I don't think it is 100 unreproducible, but doesn't feel like a real lock file atm.

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mashehu commented Jan 28, 2026

tests failing due to seqeralabs/wave#973 and no singularity for arm action atm

@JudithBernett JudithBernett mentioned this pull request Feb 2, 2026
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@JudithBernett JudithBernett reopened this Jun 2, 2026
@JudithBernett JudithBernett changed the title update container configs with most recent tools functions The conda lock files are missing the pip dependencies Jun 2, 2026
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