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New test_gpu profile + nf-test for araregistration subworkflow#25

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CaroAMN merged 1 commit into
nf-core:devfrom
CaroAMN:dev
Aug 26, 2025
Merged

New test_gpu profile + nf-test for araregistration subworkflow#25
CaroAMN merged 1 commit into
nf-core:devfrom
CaroAMN:dev

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@CaroAMN CaroAMN commented Aug 26, 2025

PR checklist

The new test_gpu profile runs the full workflow on the minimal test dataset with the 3dunet on GPU.
Added nf-test for the araregistration subworkflow. Only stub is possible, since registration only works on a whole mouse brain image.

  • [ x] This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/lsmquant branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@CaroAMN CaroAMN merged commit ec893f1 into nf-core:dev Aug 26, 2025
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