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Merge pull request #1026 from dialvarezs/fix/test-gunc-db
fix: use gunc test db from nf-core/test-datastes
2 parents 0aacd40 + 0ee217b commit 0dbed1b

2 files changed

Lines changed: 3 additions & 6 deletions

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conf/test_assembly_input.config

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@@ -56,7 +56,7 @@ params {
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exclude_unbins_from_postbinning = true
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run_gunc = true
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gunc_database_type = 'test_data'
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gunc_db = params.pipelines_testdata_base_path + 'mag/databases/gunc/ci_test.dmnd'
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skip_metaeuk = false
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metaeuk_mmseqs_db = 'Kalamari'

tests/test_assembly_input.nf.test.snap

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@@ -65,7 +65,7 @@
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},
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"-profile assembly_input": {
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"content": [
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{
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"ADJUST_MAXBIN2_EXT": {
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"coreutils": 9.5
@@ -121,9 +121,6 @@
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"FASTQC_RAW": {
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"fastqc": "0.12.1"
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},
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"GUNC_DOWNLOADDB": {
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"gunc": "1.1.0"
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},
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"GUNC_RUN": {
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"gunc": "1.1.0"
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},
@@ -175,7 +172,7 @@
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}
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}
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],
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"timestamp": "2026-04-09T09:21:33.205568806",
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"timestamp": "2026-04-21T06:05:20.469766681",
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"meta": {
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"nf-test": "0.9.5",
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"nextflow": "25.10.4"

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