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Pull requests: nf-core/mag

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Pull requests list

feat: update GTDB-Tk
#1044 opened May 27, 2026 by dialvarezs Member • Draft
11 tasks
feat: add test_default snapshot
#1042 opened May 27, 2026 by dialvarezs Member Loading…
11 tasks
Update usage docu for newcomers
#1037 opened May 19, 2026 by d4straub Collaborator • Draft
11 tasks
1
1
feat: add test_hybrid snapshot
#1029 opened Apr 28, 2026 by dialvarezs Member Loading…
11 tasks
1
6
Add coverm/contig to nf-core/modules
#997 opened Mar 12, 2026 by vinisalazar Contributor Loading…
11 tasks done
43
Migrate to official nf-core bowtie2 modules + use hostile for host removal
#857 opened Aug 28, 2025 by dialvarezs Member • Draft
11 tasks
Replace Bowtie2 custom modules with official nf-core ones
#754 opened Jan 24, 2025 by jfy133 Member • Draft
1 of 15 tasks
5
Add support for generating taxprofiler/funcscan input samplesheets for preprocessed FASTQs/FASTAs
#688 opened Oct 10, 2024 by vagkaratzas • Draft
1 of 11 tasks
1
24
Added ability to auto-create samplesheet for nf-core/phageannotator enhancement New feature or request ready to review
#543 opened Nov 20, 2023 by CarsonJM Contributor • Draft
7 of 10 tasks
@CarsonJM
32
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