chore: update changelog

Author: dialvarezs

CHANGELOG.md

@@ -16,13 +16,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#1044](https://github.com/nf-core/mag/pull/1044) - Add new `--gtdbtk_place_species` parameter (by @dialvarezs)
 - [#1047](https://github.com/nf-core/mag/issues/1007) - Add `--gtdbtk_single_job` to run GTDB-Tk classification for all bins in a single job (requested by @sarah-shah-bioinf, by @dialvarezs)
 - [#1048](https://github.com/nf-core/mag/pull/1048) - Add optional PyPOLCA polishing for long-read assemblies via `--run_pypolca` (by @Harshita-sriv)
+- [#1059](https://github.com/nf-core/mag/pull/1059) - Add `--longread_filtering_by_shortreads` parameter to enable filtlong's short-read-based long read filtering (by @dialvarezs)
 
 ### `Changed`
 
 - [#1011](https://github.com/nf-core/mag/pull/1011) - Reverted CheckM2 database download workaround from #966 (by @dialvarezs)
 - [#1020](https://github.com/nf-core/mag/pull/1020) - Update CONCOCT subworkflow and modules (by @dialvarezs)
 - [#1030](https://github.com/nf-core/mag/pull/1030) - Updated to nf-core 4.0.2 template (by @dialvarezs)
 - [#1044](https://github.com/nf-core/mag/pull/1044) - Updated GTDB-Tk to v2.7.2 / GTDB r232 (by @dialvarezs)
+- [#1059](https://github.com/nf-core/mag/pull/1059) - Changed the default long read filtering tool from `filtlong` to `chopper` (by @dialvarezs)
 
 ### `Fixed`