Skip to content

--postbinning_input to include only bins (no unassembled contigs) #528

Description

@patriciatran

Description of feature

Following up on my Slack message (10/16/2023) and as per @jfy133 to post a feature request:

"It is possible to only annotate the refined or binned mags, and not the unbinned scaffolds, without skipping the Prokka annotation step altogether? I’ve been using the --postbinning_input refined_bins_only but it looks from the docu that either option also annotates the unbinned scaffolds. The unbinned scaffold annotation tends to take a really long time for me/and lots of disk space for some reason."

I am using v.2.5.0
Thank you! :)

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions